More fixes addressing Sphinx warnings

DARIAH-DE · Mar 30, 2015 · 28f5d57 · 28f5d57
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Showing 6 changed files with 27 additions and 485 deletions.
diff --git a/source/case_study_racine.rst b/source/case_study_racine.rst
@@ -34,6 +34,7 @@ words may be calculated by summing the rows of the document-term matrix, as each
 row corresponds to one document.
 
 .. ipython:: python
+    :okwarning:
 
     import os
 
@@ -259,6 +260,8 @@ the component values associated with each document sum to one.
 
 .. ipython:: python
 
+    # to avoid division by 0 (not a problem with LDA) we add a tiny value to each cell.
+    doctopic_chunks += 1e-6  # 1e-6 is the same as 0.000001
     doctopic_chunks = doctopic_chunks / np.sum(doctopic_chunks, axis=1, keepdims=True)
 
 As we did in :ref:`previous sections <topic-model-mallet>`, we will aggregate

diff --git a/source/datasets.rst b/source/datasets.rst
@@ -15,7 +15,8 @@
     import shutil
     import subprocess
 
-    subprocess.check_call('zip -r -u source/datasets.zip data/french-tragedies-and-comedies/ data/french-tragedies-and-comedies-split/ data/french-tragedy data/french-tragedy-split data/french-plays data/austen-brontë data/austen-brontë-split data/stopwords/ data/british-fiction-corpus data/hugo-les-misérables data/hugo-les-misérables-original data/hugo-les-misérables-split', shell=True)
+    # NOTE: zip returns an exit code 12 if everything is up-to-date
+    subprocess.check_call('zip -q -r -u source/datasets.zip data/french-tragedies-and-comedies/ data/french-tragedies-and-comedies-split/ data/french-tragedy data/french-tragedy-split data/french-plays data/austen-brontë data/austen-brontë-split data/stopwords/ data/british-fiction-corpus data/hugo-les-misérables data/hugo-les-misérables-original data/hugo-les-misérables-split', shell=True)
 
 
 

diff --git a/source/index.rst b/source/index.rst
@@ -37,9 +37,6 @@ Contents
    datasets
    references
 
-..  unfinished drafts:
-    predicting_frequencies
-
 .. figure:: _static/plot_doctopic_heatmap.png
     :scale: 60 %
     :alt: Heatmap of topic shares in the ``austen-brontë`` corpus. See :ref:`topic_model_visualization`.